Custom & molecular assays · Molecular and non-molecular platforms

Assay Development

Custom and molecular assay development, from concept and biomarker discovery through clinical validation and regulatory approval to final kit manufacturing.

Meeting complex requirements

Assays built for their intended use

Our team is highly skilled in every phase of development in regulated and non-regulated environments, in the United States and abroad, supporting diagnostic development partnerships worldwide. We can step in at any stage of your project.

We offer a diverse array of platforms and technologies and support all development and testing needs, molecular and non-molecular. See the platforms and technologies we support.

300+

new assays validated since 2015

Millions

of tests performed for clients in the US and internationally

15+ years

of custom assay development experience

Intended use

What will your assay be used for?

An assay’s intended use defines what it can claim, who can run it, and how its results can be used. We design and document every assay for its intended use from day one.

RUO

Research Use Only (RUO)

Used for

Basic and translational research, and exploratory studies

Claims and reporting

Labeled “For Research Use Only. Not for use in diagnostic procedures.” Results are not reported for patient care.

Screening

Biomarker screening

Used for

Discovering and ranking candidate biomarkers across sample cohorts

Claims and reporting

Exploratory data that identify which markers move forward into assay development and validation.

GLP

GLP

Used for

Nonclinical safety and efficacy studies, including PK, PD and toxicology endpoints

Claims and reporting

Studies run under 21 CFR Part 58 that can support IND and other FDA submissions.

CLIA

CLIA (LDT)

Used for

Patient testing and clinical trial endpoints in a CLIA-certified laboratory

Claims and reporting

Results can be reported to physicians. The test is run in a single certified laboratory as a laboratory developed test.

From concept to commercialization

Support at every stage of the assay lifecycle

Bring us in for a single stage, or for the whole path from discovery to a manufactured kit.

biomarker discovery

Biomarker discovery

Research-grade assays to identify and evaluate candidate biomarkers.

assay development

Assay development

Fluid, tissue, cell-based, and molecular methods, optimized for your specimen and intended use.

assay validation

Assay validation

Validation matched to the level your use requires, from research to FDA submission.

clinical testing

Clinical testing

CLIA and GxP testing for clinical trials and studies at PacificDx, our accredited laboratory.

regulatory approval

Regulatory approval

510(k), De Novo, and PMA strategy and submissions for your diagnostic.

kit manufacture

Kit manufacturing

ISO 13485 kit manufacturing for clinical trials and commercial supply.

How we develop

A development workflow built for validation

1

Design

Define intended use, targets, specimen types, and controls; design primers, probes, or panel content.

2

Optimize

Tune extraction, input, chemistry, and analysis so the assay performs on real samples.

3

Validate

Validate to the level your use requires — research, GLP, CLIA, ISO 13485, or FDA submission.

4

Run or transfer

Run the assay in our CLIA laboratory, transfer it to yours, or manufacture it as a kit.

Next-generation sequencing

Let us build your next custom NGS panel

Applications

Custom panels for

  • Tumor profiling
  • Cancer liquid biopsy
  • Pharmacogenomics
  • Neurology
  • Cardiology
  • Infectious disease

Methods

NGS solutions for virtually any project

  • Amplicon sequencing
  • RNA sequencing
  • Targeted sequencing
  • Viral genome sequencing
  • Epigenomics
  • Exosome analysis

PCR, qPCR & ddPCR

Let us design your next PCR assay

Applications

  • Gene expression
  • Copy number variation (CNV), including absolute CNV
  • Confirmatory testing
  • SNP genotyping and allelic discrimination
  • Methylation analysis (CpG)
  • Pathogen detection and quality control
  • Rare mutation detection
  • Low-abundance transcript detection
  • Viral titer (copies/mL)
  • Vector copy number (copies/genome)
  • ctDNA and cfDNA detection in liquid biopsy

Which validation level do you need?

From research-grade to FDA submission, compare what each validation level involves.

Flow cytometry

Let us develop your next flow cytometry assay

Applications

Cell-based assays for

  • Immunophenotyping
  • Receptor occupancy
  • Pharmacodynamic biomarkers
  • Immune monitoring in clinical trials
  • Cell therapy characterization

Methods

Multiplex panels on the CytoFLEX S

  • Up to 13 biomarkers per tube
  • Four lasers (405, 488, 638 and 808 nm)
  • Panel design and fluorochrome optimization
  • Cell sorting
  • Fit-for-purpose, GLP and CLIA validation

ELISA & immunoassays

Let us develop your next ELISA

Applications

Protein quantitation for

  • Biomarker quantitation
  • Pharmacokinetics (PK)
  • Anti-drug antibodies (ADA)
  • Cytokine profiling
  • Companion diagnostic development

Methods

From antibody pair to validated assay

  • Antibody pair screening and reagent selection
  • Sandwich, competitive and direct formats
  • Matrix effect and interference studies
  • Precision, linearity and limits of quantitation
  • Validation to GLP, CLIA or 510(k) requirements

LC-MS/MS

Let us develop your next mass spectrometry assay

Applications

Targeted quantitation of

  • Small molecules and metabolites
  • Amino acids
  • Therapeutic drug monitoring
  • Pharmacokinetics (PK)
  • Peptides

Methods

Validation to CLSI and FDA expectations

  • Method development and method transfer
  • Calibration and quality control design
  • Matrix effect, recovery and carryover studies
  • Accuracy and precision per CLSI guidelines
  • Validation packages for CLIA and 510(k)

Medical device development

From prototype assay to cleared IVD device

Applications

Device programs we support

  • IVD kits and reagents
  • Companion diagnostics
  • Sample collection devices
  • Instrument-based and point-of-care tests

Methods

Design controls through submission

  • Design and development planning under ISO 13485
  • Risk management to ISO 14971
  • Design verification and validation
  • Analytical and clinical performance studies
  • 510(k), De Novo and PMA support
  • GMP kit manufacturing

Exceptional assay development specialists

Built for pharma, biotech, and diagnostics teams

Pharma and biotech sponsors need increasingly complex assays and shorter turnaround times for central laboratory services — including disease- and drug-specific biomarker assessments that determine the safety and efficacy of compounds in development.

Our development team is staffed by dedicated scientists, equipped with current technologies and standardized instrumentation, with expertise in fluid, tissue, cell-based, and molecular assays for biomarker testing.

Applications we have supported

  • Research-grade assays for biomarker discovery
  • CLIA-validated assays for a Phase 2 companion diagnostic
  • GLP-validated assays to evaluate safety and efficacy
  • ISO 13485-manufactured diagnostics for worldwide clinical trials
  • 510(k)-cleared and PMA-approved complementary and companion diagnostics

Validation levels

What level of validation do I require?

The right level depends on how the results will be used. Each step up adds requirements — we help you validate to the level you need now, and plan for the one you need next.

Research

Research assays

Used for

Biomarker discovery in university and research settings

What it involves

No formal requirements, but every ResearchDx validation still assesses accuracy, precision, detection limits, and reportable range

GLP

GLP validation

Used for

Nonclinical studies of safety and efficacy

What it involves

Fit-for-purpose validation documenting accuracy, precision, and detection limits; more studies if the data will support an FDA submission

CLIA

CLIA validation

Used for

Patient testing in clinical laboratories and clinical trials

What it involves

Accuracy, precision, analytical sensitivity and specificity, interfering substances, and reportable range; accreditors such as CAP and A2LA may add requirements

ISO 13485

ISO 13485 validation

Used for

Manufactured diagnostics, including kits for clinical trials

What it involves

Validation within a quality management system that meets ISO 13485 — the basis of FDA’s QMSR

Not sure which level you need?

Tell us your intended use and where the results will go. We will recommend a validation path.

Let’s build your assay.

With over 15 years of custom assay development experience, we can take on your project at any stage.